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How to Cite in CSE Style: Council of Science Editors Guide

How to Cite in CSE Style: Council of Science Editors Guide

This guide will help you understand how to properly cite sources in APA format, the essential citation format for biology, natural sciences, and scientific research, ensuring your academic work meets the necessary standards.

3 Oca 2026

By

Author Picture: Joe Pacal, MSc

Joe Pacal, MSc

TL;DR

CSE style offers three systems: citation-sequence (numbers in order of appearance), citation-name (numbers alphabetically), and name-year (author-date). This guide covers all three with examples for journals, books, and online sources. The 9th edition is current. Note: no periods after author initials or journal abbreviations. Perfect for biology and natural sciences.

What is the CSE Citation Format?

The Council of Science Editors (CSE) style is the go-to citation format for researchers in biology, ecology, environmental science, and other natural sciences. Originally developed in the 1960s as the Council of Biology Editors (CBE) style, it has evolved into a comprehensive system used by scientific journals worldwide. The current standard is the CSE Manual, 9th Edition (2024).

Quick Overview: CSE Citation Format

CSE offers three distinct documentation systems, and you should confirm with your instructor or target journal which one to use:

Citation-Sequence: Sources are numbered in the order they first appear in your text. Your reference list follows the same numerical order.

Citation-Name: Sources are numbered alphabetically by author surname. Numbers remain consistent throughout the text regardless of when sources appear.

Name-Year: Similar to APA, this system uses parenthetical citations with author surnames and publication years. The reference list is arranged alphabetically.

A key feature across all CSE systems: journal titles are abbreviated without periods (e.g., "J Exp Biol" not "J. Exp. Biol."), and author initials appear without periods or spaces.

In-Text Citations in CSE

Citation-Sequence System

Number sources sequentially as they appear:

Recent studies have examined bacterial resistance mechanisms¹. The molecular pathways involved show remarkable complexity²,³. Earlier work established foundational concepts¹.

For multiple consecutive references, use an en dash: ⁵⁻⁷

For non-consecutive references, use commas: ²,⁴,⁸

Citation-Name System

Numbers correspond to alphabetical reference list order:

According to research by Adams⁵ and earlier findings by Chen¹...

Name-Year System

Include author surnames and year in parentheses:

Bacterial resistance has been well documented (Morrison and Chen 2023). For three or more authors, use "et al." (Patel et al. 2024).

Reference List Format

Journal Articles

Citation-Sequence/Citation-Name format:

Name-Year format:

For more than 5 authors, list the first author followed by "et al.":

Books

Single author:

Edited volume:

Websites

Include the accessed date and URL:

5. National Institutes of Health. Positive emotions and your health [Internet]. Bethesda (MD): NIH; 2015 Aug [cited 2025 Jan 2]

Dissertations and Theses

6. Liang S. Transport properties of topological semimetals and non-symmorphic topological insulator [dissertation]

CSE Citation Examples by Source Type

Conference Papers

Government Reports

Preprints

9. Medina M et al. Surface morphometrics reveals local membrane thickness variation [preprint]

Common CSE Mistakes to Avoid

Forgetting journal abbreviations: CSE requires abbreviated journal titles. Use the ISSN List of Title Word Abbreviations to find correct forms.

Including periods in author initials: Write "Morrison JK" not "Morrison J.K." or "Morrison, J. K."

Using "and" or "&" between authors: Separate all authors with commas, including the last author.

Inconsistent system use: Stick to one citation system throughout your paper—don't mix citation-sequence with name-year.

Missing access dates for online sources: Always include when you accessed internet sources.

CSE Citation Tools

Reference managers like Zotero and Mendeley include CSE style templates. For quick verification, the CSE Citation Quick Guide provides formatted examples directly from the publishers.

When working with scientific literature, tools like Wonders AI can help you discover relevant sources and organize your research while ensuring proper attribution.

References

  • Council of Science Editors. Scientific Style and Format: The CSE Manual for Authors, Editors, and Publishers. 9th ed. Chicago: University of Chicago Press; 2024.

  • Duke University Libraries. Council of Science Editors (CSE) Citation Style Guide [Internet]. Durham (NC): Duke University; [cited 2025 Jan 2]. Available from: https://guides.library.duke.edu/cse

  • Dalhousie University Libraries. CSE 8th Edition Citation Style Guide [Internet]. Halifax (NS): Dalhousie University; [cited 2025 Jan 2]. Available from: https://dal.ca.libguides.com/CitationStyleGuide/CSE

Frequently asked questions

What's the difference between CSE and Vancouver style?

Vancouver style is actually derived from CSE and follows similar conventions. The main difference is that Vancouver was developed specifically for biomedical journals by the International Committee of Medical Journal Editors, while CSE covers broader scientific disciplines including ecology, geology, and environmental sciences. In practice, they're often interchangeable for medical papers, but always check your target journal's specific requirements.

What's the difference between CSE and Vancouver style?

Vancouver style is actually derived from CSE and follows similar conventions. The main difference is that Vancouver was developed specifically for biomedical journals by the International Committee of Medical Journal Editors, while CSE covers broader scientific disciplines including ecology, geology, and environmental sciences. In practice, they're often interchangeable for medical papers, but always check your target journal's specific requirements.

What's the difference between CSE and Vancouver style?

Vancouver style is actually derived from CSE and follows similar conventions. The main difference is that Vancouver was developed specifically for biomedical journals by the International Committee of Medical Journal Editors, while CSE covers broader scientific disciplines including ecology, geology, and environmental sciences. In practice, they're often interchangeable for medical papers, but always check your target journal's specific requirements.

Should I include DOIs in my CSE citations?

Yes, including DOIs is strongly recommended when available. The CSE Manual encourages providing DOIs as full URLs (https://doi.org/...) to improve reference accessibility and permanence. Place the DOI at the end of your reference entry.

Should I include DOIs in my CSE citations?

Yes, including DOIs is strongly recommended when available. The CSE Manual encourages providing DOIs as full URLs (https://doi.org/...) to improve reference accessibility and permanence. Place the DOI at the end of your reference entry.

Should I include DOIs in my CSE citations?

Yes, including DOIs is strongly recommended when available. The CSE Manual encourages providing DOIs as full URLs (https://doi.org/...) to improve reference accessibility and permanence. Place the DOI at the end of your reference entry.

Can I cite personal communications in CSE style?

CSE recommends handling personal communications within the text rather than in the reference list, since readers cannot verify them. Include the nature of the communication, the person's name, and the date in parentheses within your text: "(A. Smith, personal communication, 2024 Mar 15)." You may need written permission from the person cited.

Can I cite personal communications in CSE style?

CSE recommends handling personal communications within the text rather than in the reference list, since readers cannot verify them. Include the nature of the communication, the person's name, and the date in parentheses within your text: "(A. Smith, personal communication, 2024 Mar 15)." You may need written permission from the person cited.

Can I cite personal communications in CSE style?

CSE recommends handling personal communications within the text rather than in the reference list, since readers cannot verify them. Include the nature of the communication, the person's name, and the date in parentheses within your text: "(A. Smith, personal communication, 2024 Mar 15)." You may need written permission from the person cited.

How do I cite a source with no author in CSE?

When no individual author is identified, begin the citation with the title of the work. For organizational authors (like government agencies or institutions), use the organization's name in place of an author. For example: "World Health Organization. Global tuberculosis report 2024. Geneva: WHO; 2024."

How do I cite a source with no author in CSE?

When no individual author is identified, begin the citation with the title of the work. For organizational authors (like government agencies or institutions), use the organization's name in place of an author. For example: "World Health Organization. Global tuberculosis report 2024. Geneva: WHO; 2024."

How do I cite a source with no author in CSE?

When no individual author is identified, begin the citation with the title of the work. For organizational authors (like government agencies or institutions), use the organization's name in place of an author. For example: "World Health Organization. Global tuberculosis report 2024. Geneva: WHO; 2024."

How do I handle in-press or forthcoming articles?

For articles accepted but not yet published, include as much information as available, add "[forthcoming]" or "Forthcoming" after the journal title, and include a DOI if one has been assigned. Update the citation with complete information once the article is published.

How do I handle in-press or forthcoming articles?

For articles accepted but not yet published, include as much information as available, add "[forthcoming]" or "Forthcoming" after the journal title, and include a DOI if one has been assigned. Update the citation with complete information once the article is published.

How do I handle in-press or forthcoming articles?

For articles accepted but not yet published, include as much information as available, add "[forthcoming]" or "Forthcoming" after the journal title, and include a DOI if one has been assigned. Update the citation with complete information once the article is published.

What's the difference between CSE and Vancouver style?

Vancouver style is actually derived from CSE and follows similar conventions. The main difference is that Vancouver was developed specifically for biomedical journals by the International Committee of Medical Journal Editors, while CSE covers broader scientific disciplines including ecology, geology, and environmental sciences. In practice, they're often interchangeable for medical papers, but always check your target journal's specific requirements.

How do I cite a source with no author in CSE?

When no individual author is identified, begin the citation with the title of the work. For organizational authors (like government agencies or institutions), use the organization's name in place of an author. For example: "World Health Organization. Global tuberculosis report 2024. Geneva: WHO; 2024."

Should I include DOIs in my CSE citations?

Yes, including DOIs is strongly recommended when available. The CSE Manual encourages providing DOIs as full URLs (https://doi.org/...) to improve reference accessibility and permanence. Place the DOI at the end of your reference entry.

How do I handle in-press or forthcoming articles?

For articles accepted but not yet published, include as much information as available, add "[forthcoming]" or "Forthcoming" after the journal title, and include a DOI if one has been assigned. Update the citation with complete information once the article is published.

Can I cite personal communications in CSE style?

CSE recommends handling personal communications within the text rather than in the reference list, since readers cannot verify them. Include the nature of the communication, the person's name, and the date in parentheses within your text: "(A. Smith, personal communication, 2024 Mar 15)." You may need written permission from the person cited.

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The Harvard citation style used in by UK, Australian, and international universities.

The ISO 690 Style: International Bibliography Standard (2021 Edition)

MLA citation style for humanities, literature, and languages

The citation style used in the UK by Law studies.

The student-friendly guide to Chicago-style citations for research papers and theses.

The author-date system for anthropological research.

ABNT is the official citation format used in Brazil.

ABNT is the official citation format used in Brazil.

The ACS citation style for chemistry and related sciences.

The Australian AGLC standard for citing in legal contexts.

The standard citation style for physics journals and American Institute of Physics publications.

A clearer alternative to the Bluebook for law students and practitioners.

AMA citations for medicine and health sciences.

The citation format for maths and American Mathematical Society publications.

The APA citation style for psychology, education, and social sciences

The official citation style of the American Political Science Association developed.

The citation style used for sociology and social sciences.

The citation format for civil engineering journals and ASCE publications.

The American Society of Mechanical Engineers numbered citation system.

Legal citations for law students and practitioners.

Chicago-format citations used by history, arts, and humanities

The essential citation format for biology, natural sciences, and scientific research.

GB/T 7714是中国学术写作的国家标准引用格式。

The Harvard citation style used in by UK, Australian, and international universities.

The IEEE citations for engineering and computer science.

The ISO 690 Style: International Bibliography Standard (2021 Edition)

The MHRA citation style guide used by arts and humanities in the UK.

MLA citation style for humanities, literature, and languages

The citation format for biomedical research, medical journals, and life sciences.

The citation style used in the UK by Law studies.

Writing about biblical or theological topics? SBL style is the standard for the field.

The student-friendly guide to Chicago-style citations for research papers and theses.

The Vancouver citation style for biomedical and health sciences.

The author-date system for anthropological research.

ABNT is the official citation format used in Brazil.

The Australian AGLC standard for citing in legal contexts.

A clearer alternative to the Bluebook for law students and practitioners.

The citation format for maths and American Mathematical Society publications.

The official citation style of the American Political Science Association developed.

The citation format for civil engineering journals and ASCE publications.

Legal citations for law students and practitioners.

The essential citation format for biology, natural sciences, and scientific research.

The IEEE citations for engineering and computer science.

The MHRA citation style guide used by arts and humanities in the UK.

The citation format for biomedical research, medical journals, and life sciences.

Writing about biblical or theological topics? SBL style is the standard for the field.

The Vancouver citation style for biomedical and health sciences.

ABNT is the official citation format used in Brazil.

The ACS citation style for chemistry and related sciences.

The standard citation style for physics journals and American Institute of Physics publications.

AMA citations for medicine and health sciences.

The APA citation style for psychology, education, and social sciences

The citation style used for sociology and social sciences.

The American Society of Mechanical Engineers numbered citation system.

Chicago-format citations used by history, arts, and humanities

GB/T 7714是中国学术写作的国家标准引用格式。

The Harvard citation style used in by UK, Australian, and international universities.

The ISO 690 Style: International Bibliography Standard (2021 Edition)

MLA citation style for humanities, literature, and languages

The citation style used in the UK by Law studies.

The student-friendly guide to Chicago-style citations for research papers and theses.

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Finding these guides useful?

Try these techniques in Wonders—an AI workspace for literature review. 21 days free. Students get 50% off.